PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_B1C947D2B.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 851aa    MW: 94256.9 Da    PI: 6.5189
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_B1C947D2B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.2e-19264363198
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++
  Traes_2DS_B1C947D2B.1 264 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSR 350
                            99**************************555567778***************9989999999***9.********************8 PP

                            -SSSEE..EEEEE- CS
                     B3  85 dgrsefelvvkvfr 98 
                            ++  +++lv+++++
  Traes_2DS_B1C947D2B.1 351 IE-PGGKLVMGFRK 363
                            87.77777877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-31256373IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-21261364IPR015300DNA-binding pseudobarrel domain
CDDcd100173.47E-24262363No hitNo description
PfamPF023623.9E-16264363IPR003340B3 DNA binding domain
SMARTSM010194.0E-22264364IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547264365IPR003340B3 DNA binding domain
PROSITE profilePS5105014.643525575IPR011124Zinc finger, CW-type
PfamPF074961.6E-11530572IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MKNPGPQPVP CQVAPKLFLP PQNNQRLFGK SDEFLPGRPL ESPSLMLDSR NDDIAIIAKS  60
NHPFMVKNLE IGQSSNILRQ KEIENGARQI KWEQPTLSIG DMGRMPFLIR PQSALESPQS  120
QCTRRDDNRD PTADSTTSES ISEAGLSMSL GIANNGNKME ATSTMERPMV SPTTPFSEGR  180
ELATTLSPFQ HAQRARHFLT RPPRVAEGAA FDPMRDGFPH LRVARPPAEG RGRNQLLPRY  240
WPRITDQELQ QISGDSNSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQPEGRP  300
LTIQDAKGKE WHFQFRFWPN NNSRMYVLEG VTPCIQSLQL QAGDTVTFSR IEPGGKLVMG  360
FRKATNTVSL PDSQISAIAT GSLLGDSFFS NTNENLSIVS GYSGFLQSMK GAADLQPSSL  420
FDHHANSADG DVSWLKADRF GGRPDEGSFQ FLHKRSRNIG SKSRRLLMDN EEALELKLSW  480
EEAQELLRPA PSAKPTIVMI EDYEFEEYDE PPVFAKRSIF TSRSTGEQDQ WIQCDDCSKW  540
RRVPLNVIIA SKWRCADNTW DPKSCSCSAP EELAHKELQS ILQQYEEIRR RKSNYFLKQS  600
IPEMDASSLD ALATAAVFGE VGNQGAASVA TTTKHPRHRP GCTCIVCIQP PSGKGPKHNP  660
ACTCNVCMTV RRRFKTLMMR KKQRQSEREE AEASKRIAWV GRDEPEGSNL SRSPRTVDTT  720
RDCDVIMFDK ADANKGHIDL NFHPASREEE QQHGGQPRVS MVSLLEVANR PLESYMKQNG  780
LVSLAAEQGS SSGTATVPSQ PAPMESEERP SDEGRAVAVE QEREPVDNMA VDEAAGENQG  840
HAASASDIAA A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-1326335013102DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1670681RRRFKTLMMRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3586790.0AK358679.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1081G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562447.20.0PREDICTED: B3 domain-containing protein Os07g0679700-like
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A096UNI30.0A0A096UNI3_WHEAT; Uncharacterized protein
STRINGBRADI1G17680.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-178HSI2-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]